PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g24680
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 285aa    MW: 32777.8 Da    PI: 9.5173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g24680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058118141123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C++C+ksF+    L +H  + H
  CA03g24680 118 WRCGYCKKSFRAEKFLDQHFDNrH 141
                 58**********999999976655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642118143IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKILRQIPAK NYSYILLPSF VLIIVFSSSS ISATPSLSPS DQGTEKHATS PEQDKSHVHE  60
VHCSRERSRA AWKVIEEYLM PFVEREKYEL PRQCRLHPSN DIFRDQEEHK IHFDLNEWRC  120
GYCKKSFRAE KFLDQHFDNR HSNLLDTVHS KCLADVCGAL HCDLVMEFKS KKTKCNPAAA  180
ARNRHLCEGL ADKCFPANES PSATRLHELF LRQFCDAHTC SGGRKPFSKG GKKHTNRFYF  240
AASVLTLMLL PLFYLIVYLY QKEMKRGTQE LKRIAKVGRK AKPS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144300.0BT014430.1 Lycopersicon esculentum clone 133748R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563775.10.0PREDICTED: uncharacterized protein LOC107862660
TrEMBLK4BK001e-180K4BK00_SOLLC; Uncharacterized protein
STRINGSolyc03g111370.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-112C2H2-like zinc finger protein